Transcript: Human NR_138422.2

Homo sapiens mitoguardin 2 (MIGA2), transcript variant 4, non-coding RNA.

Source:
NCBI, updated 2019-07-31
Taxon:
Homo sapiens (human)
Gene:
MIGA2 (84895)
Length:
3629
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
NR_138422.2
NBCI Gene record:
MIGA2 (84895)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NR_138422.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000425571 TGTTCCTGTACACGACGTTTG pLKO_005 270 3UTR 100% 6.000 8.400 N MIGA2 n/a
2 TRCN0000172533 GCCTTCAGTTCAACGCACAAA pLKO.1 2889 3UTR 100% 4.950 6.930 N MIGA2 n/a
3 TRCN0000437856 CAATGTGCGCTACACGTCACT pLKO_005 1835 3UTR 100% 2.640 3.696 N MIGA2 n/a
4 TRCN0000429724 CAATGCAGAGAGCCTGTACAT pLKO_005 712 3UTR 100% 4.950 3.465 N MIGA2 n/a
5 TRCN0000438002 CAGTACCTGAGGGACATGTTC pLKO_005 1806 3UTR 100% 4.950 3.465 N MIGA2 n/a
6 TRCN0000168151 CCCTTCAGTGAAGAAAGGATA pLKO.1 490 3UTR 100% 4.950 3.465 N MIGA2 n/a
7 TRCN0000179638 GCTTTCTTCAAGCACCAGATT pLKO.1 1782 3UTR 100% 4.950 3.465 N Miga2 n/a
8 TRCN0000439781 CATTCTCCCAGCTACGGTTGA pLKO_005 300 3UTR 100% 4.050 2.835 N MIGA2 n/a
9 TRCN0000432115 CCTTCTCAGAGAGTTTGCAAC pLKO_005 2458 3UTR 100% 4.050 2.835 N MIGA2 n/a
10 TRCN0000423139 CTGACTTCAGAGGATTCCTTC pLKO_005 1058 3UTR 100% 4.050 2.835 N MIGA2 n/a
11 TRCN0000172389 CTGATGGCTTCATCTCCCATT pLKO.1 1681 3UTR 100% 4.050 2.835 N MIGA2 n/a
12 TRCN0000167974 CAGTGAAGAAAGGATACTCCA pLKO.1 495 3UTR 100% 2.640 1.848 N MIGA2 n/a
13 TRCN0000434518 TGCTGAAGTCTGTGCTTTCTT pLKO_005 1769 3UTR 100% 5.625 3.375 N MIGA2 n/a
Download CSV

shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NR_138422.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

Download CSV

All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_12873 pDONR223 100% 17.4% None (many diffs) n/a
2 ccsbBroad304_12873 pLX_304 0% 17.4% V5 (many diffs) n/a
Download CSV