Transcript: Human NR_158715.2

Homo sapiens TAM41 mitochondrial translocator assembly and maintenance homolog (TAMM41), transcript variant 15, non-coding RNA.

Source:
NCBI, updated 2019-07-31
Taxon:
Homo sapiens (human)
Gene:
TAMM41 (132001)
Length:
2212
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
NR_158715.2
NBCI Gene record:
TAMM41 (132001)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NR_158715.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000431089 GTAATGGTAGGCTTATCAAAT pLKO_005 763 3UTR 100% 13.200 18.480 N TAMM41 n/a
2 TRCN0000426449 AGCCCAATATAGCCCACTTTC pLKO_005 1221 3UTR 100% 10.800 15.120 N TAMM41 n/a
3 TRCN0000420990 AGATCAGCCCTCGATAGAAAT pLKO_005 1052 3UTR 100% 13.200 10.560 N TAMM41 n/a
4 TRCN0000148712 CACGTCCATCCAGAATAACTA pLKO.1 707 3UTR 100% 5.625 4.500 N TAMM41 n/a
5 TRCN0000429925 GCGCTGGAGTTTACTACAATT pLKO_005 730 3UTR 100% 13.200 9.240 N TAMM41 n/a
6 TRCN0000148040 GAAGACCTCTTCATAGAGATT pLKO.1 1127 3UTR 100% 4.950 3.465 N TAMM41 n/a
7 TRCN0000148145 GACTTTGTGTTCACAGTAGAT pLKO.1 603 3UTR 100% 4.950 3.465 N TAMM41 n/a
8 TRCN0000148146 GCATTCAAAGAACCTGAAGAA pLKO.1 638 3UTR 100% 4.950 3.465 N TAMM41 n/a
9 TRCN0000432496 TGAGTCTGGCTTTCGTCTACG pLKO_005 320 3UTR 100% 4.050 2.835 N TAMM41 n/a
10 TRCN0000430266 TTATCTCAGTGAACGAGGATG pLKO_005 1023 3UTR 100% 4.050 2.835 N TAMM41 n/a
11 TRCN0000424134 TCCTCAACTGGAATAACTTAT pLKO_005 820 3UTR 100% 13.200 7.920 N TAMM41 n/a
12 TRCN0000148635 CTGGACTTTGTGTTCACAGTA pLKO.1 600 3UTR 100% 4.950 2.970 N TAMM41 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NR_158715.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.