Transcript: Mouse XM_003689184.5

PREDICTED: Mus musculus predicted gene 13202 (Gm13202), transcript variant X2, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Chchd2-ps (433806)
Length:
706
CDS:
61..522

Additional Resources:

NCBI RefSeq record:
XM_003689184.5
NBCI Gene record:
Chchd2-ps (433806)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_003689184.5, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000251043 ACAAGTGTGGACCCTTATATT pLKO_005 575 3UTR 100% 15.000 7.500 Y Chchd2 n/a
2 TRCN0000180376 GTACAAGTGTGGACCCTTATA pLKO.1 573 3UTR 100% 13.200 6.600 Y Chchd2 n/a
3 TRCN0000251040 CTCTAGAGATCAAGCAGTTTC pLKO_005 410 CDS 100% 10.800 5.400 Y Chchd2 n/a
4 TRCN0000251041 GCAAAGCCCGACATCACTTAC pLKO_005 337 CDS 100% 10.800 5.400 Y Chchd2 n/a
5 TRCN0000184420 GACCTTGCTCTCTAGAGATCA pLKO.1 401 CDS 100% 4.950 2.475 Y Chchd2 n/a
6 TRCN0000265318 TCAGAACCAGAGCGATGTCAA pLKO_005 441 CDS 100% 4.950 2.475 Y Chchd2 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_003689184.5, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.