Transcript: Human XM_005245513.4

PREDICTED: Homo sapiens acidic nuclear phosphoprotein 32 family member E (ANP32E), transcript variant X1, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
ANP32E (81611)
Length:
3480
CDS:
348..1208

Additional Resources:

NCBI RefSeq record:
XM_005245513.4
NBCI Gene record:
ANP32E (81611)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_005245513.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000077935 GTATGGCTAATGTGGAACTAA pLKO.1 490 CDS 100% 5.625 7.875 N ANP32E n/a
2 TRCN0000333102 GTATGGCTAATGTGGAACTAA pLKO_005 490 CDS 100% 5.625 7.875 N ANP32E n/a
3 TRCN0000077934 CCAGCTTAAATAAACTTCGAA pLKO.1 529 CDS 100% 3.000 4.200 N ANP32E n/a
4 TRCN0000353076 CCCGGCTTCCCAGCTTAAATA pLKO_005 520 CDS 100% 15.000 10.500 N ANP32E n/a
5 TRCN0000077933 GCAGAATAGTAAAGGTTCTAT pLKO.1 1744 3UTR 100% 5.625 3.938 N ANP32E n/a
6 TRCN0000077257 CCAAATCTTACCTACCTCAAT pLKO.1 609 CDS 100% 4.950 3.465 N Anp32e n/a
7 TRCN0000311770 CCAAATCTTACCTACCTCAAT pLKO_005 609 CDS 100% 4.950 3.465 N Anp32e n/a
8 TRCN0000077936 CCTCTCATACTTAATGAAAGA pLKO.1 998 CDS 100% 4.950 3.465 N ANP32E n/a
9 TRCN0000333036 CCTCTCATACTTAATGAAAGA pLKO_005 998 CDS 100% 4.950 3.465 N ANP32E n/a
10 TRCN0000077254 CCTACCTCAATCTGAGTGGAA pLKO.1 619 CDS 100% 2.640 1.848 N Anp32e n/a
11 TRCN0000077937 GATGGATTTGATCAGGAGGAT pLKO.1 783 CDS 100% 2.640 1.848 N ANP32E n/a
12 TRCN0000344682 CTAGTCTGTTAATGATCATAT pLKO_005 1370 3UTR 100% 0.000 0.000 N ANP32E n/a
13 TRCN0000428082 GAGGATGAGGATGAGGATGAA pLKO_005 927 CDS 100% 4.950 2.475 Y TAF7L n/a
14 TRCN0000153022 GATGAGGATGAGGATGAAGAT pLKO.1 930 CDS 100% 4.950 2.475 Y OS9 n/a
15 TRCN0000087583 AGGAGGAAGAGGAAGAGGAAA pLKO.1 910 CDS 100% 4.950 2.475 Y Adam32 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_005245513.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.