Transcript: Human XM_005246777.4

PREDICTED: Homo sapiens Ras association (RalGDS/AF-6) and pleckstrin homology domains 1 (RAPH1), transcript variant X2, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
RAPH1 (65059)
Length:
9700
CDS:
170..4078

Additional Resources:

NCBI RefSeq record:
XM_005246777.4
NBCI Gene record:
RAPH1 (65059)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_005246777.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000077859 GCCAGGACTATCGGAACAAAT pLKO.1 1683 CDS 100% 13.200 18.480 N RAPH1 n/a
2 TRCN0000262118 GAGCATCTGGTATCTACTATG pLKO_005 1587 CDS 100% 10.800 15.120 N Raph1 n/a
3 TRCN0000077861 GCTTATATTTATGGAGCGTAT pLKO.1 1366 CDS 100% 4.050 5.670 N RAPH1 n/a
4 TRCN0000077862 GCGTCAAATCACAGAAACGAA pLKO.1 496 CDS 100% 3.000 4.200 N RAPH1 n/a
5 TRCN0000415429 GATGCTGAAGTACACTCTATT pLKO_005 761 CDS 100% 13.200 9.240 N RAPH1 n/a
6 TRCN0000077860 GCACCTTGAAAGGATTATCTT pLKO.1 561 CDS 100% 5.625 3.938 N RAPH1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_005246777.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.