Transcript: Human XM_005247681.3

PREDICTED: Homo sapiens coiled-coil domain containing 191 (CCDC191), transcript variant X7, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
CCDC191 (57577)
Length:
2961
CDS:
96..1943

Additional Resources:

NCBI RefSeq record:
XM_005247681.3
NBCI Gene record:
CCDC191 (57577)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_005247681.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000121703 CGTAGGAAGGTAGTTGAAATT pLKO.1 1830 CDS 100% 13.200 18.480 N CCDC191 n/a
2 TRCN0000145061 CCAAAGGAACATTCTAGAGAT pLKO.1 2155 3UTR 100% 4.950 6.930 N CCDC191 n/a
3 TRCN0000143761 CTTCGTAGGAAGGTAGTTGAA pLKO.1 1827 CDS 100% 4.950 6.930 N CCDC191 n/a
4 TRCN0000439913 AGCTGCGGAGGGAGATAATTG pLKO_005 50 5UTR 100% 13.200 9.240 N CCDC191 n/a
5 TRCN0000433984 ATTCTTGATCATAGGATTAAG pLKO_005 141 CDS 100% 13.200 9.240 N CCDC191 n/a
6 TRCN0000141049 CCACCTGCAACTGCTGAATAA pLKO.1 2619 3UTR 100% 13.200 9.240 N CCDC191 n/a
7 TRCN0000429865 GTTGCTGATGTGACCTTAATG pLKO_005 2285 3UTR 100% 13.200 9.240 N CCDC191 n/a
8 TRCN0000432658 ATTGCTAGTCATTCACTATAG pLKO_005 2113 3UTR 100% 10.800 7.560 N CCDC191 n/a
9 TRCN0000444531 GCTGGCTACAGTACGTGATTG pLKO_005 1582 CDS 100% 10.800 7.560 N CCDC191 n/a
10 TRCN0000145585 CGAGCTACTTCTTAGATCAAA pLKO.1 2047 3UTR 100% 5.625 3.938 N CCDC191 n/a
11 TRCN0000143350 GAAAGGGTCTTGCTAAGGAAA pLKO.1 1365 CDS 100% 4.950 3.465 N CCDC191 n/a
12 TRCN0000142483 GCAACGAGACACTCAGAACTA pLKO.1 730 CDS 100% 4.950 3.465 N CCDC191 n/a
13 TRCN0000142651 GTCAGGAAAGTCTGGCTAGAA pLKO.1 1504 CDS 100% 4.950 3.465 N CCDC191 n/a
14 TRCN0000143607 GAGTAAGACAAGTCTGGTGAA pLKO.1 1916 CDS 100% 4.050 2.835 N CCDC191 n/a
15 TRCN0000121684 GCTGAATAATACACTCAGTTT pLKO.1 2631 3UTR 100% 4.950 2.970 N CCDC191 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_005247681.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.