Transcript: Human XM_005254228.3

PREDICTED: Homo sapiens integrin subunit alpha 11 (ITGA11), transcript variant X2, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
ITGA11 (22801)
Length:
9502
CDS:
616..3876

Additional Resources:

NCBI RefSeq record:
XM_005254228.3
NBCI Gene record:
ITGA11 (22801)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_005254228.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000437137 GGAGACTGGGACACCTTTAAC pLKO_005 4073 3UTR 100% 13.200 18.480 N ITGA11 n/a
2 TRCN0000420320 AGTTACCAGAATGCCCGATTT pLKO_005 1915 CDS 100% 10.800 15.120 N ITGA11 n/a
3 TRCN0000417711 ACGGCATTTGGCATTGAATTT pLKO_005 1033 CDS 100% 13.200 9.240 N ITGA11 n/a
4 TRCN0000057753 CCCTCTGGAATGCACTGAATA pLKO.1 4948 3UTR 100% 13.200 9.240 N ITGA11 n/a
5 TRCN0000419408 CTTACGCTTCCACCTCAAATA pLKO_005 3147 CDS 100% 13.200 9.240 N ITGA11 n/a
6 TRCN0000057754 GCTCTTACTTTGGGAGTGAAA pLKO.1 1739 CDS 100% 4.950 3.465 N ITGA11 n/a
7 TRCN0000057756 GCTGGAGAGATACGATGGTAT pLKO.1 3234 CDS 100% 4.950 3.465 N ITGA11 n/a
8 TRCN0000057757 GCCATCCAAGATCAACATCTT pLKO.1 2253 CDS 100% 0.495 0.347 N ITGA11 n/a
9 TRCN0000166364 CACACACACACACACACACAA pLKO.1 146 5UTR 100% 4.950 2.475 Y KAAG1 n/a
10 TRCN0000264189 CAAGTAGCTGGGACTACAGGA pLKO_005 7999 3UTR 100% 2.640 1.320 Y LINC01098 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_005254228.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.