Transcript: Human XM_005259672.3

PREDICTED: Homo sapiens midnolin (MIDN), transcript variant X4, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
MIDN (90007)
Length:
3920
CDS:
517..2049

Additional Resources:

NCBI RefSeq record:
XM_005259672.3
NBCI Gene record:
MIDN (90007)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_005259672.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000159727 GATGTGAACATCACGTGTTAT pLKO.1 3449 3UTR 100% 13.200 9.240 N MIDN n/a
2 TRCN0000164046 CAGAAGTCAACCCTGACATCA pLKO.1 2006 CDS 100% 4.950 3.465 N MIDN n/a
3 TRCN0000159411 GTCATTATGCACTTTACAGAT pLKO.1 2496 3UTR 100% 4.950 3.465 N MIDN n/a
4 TRCN0000163519 GTCAACCCTGACATCAAGTCA pLKO.1 2011 CDS 100% 3.000 2.100 N MIDN n/a
5 TRCN0000164624 CCCTGACATCAAGTCAGAGTT pLKO.1 2016 CDS 100% 0.495 0.347 N MIDN n/a
6 TRCN0000164261 CCTGACATCAAGTCAGAGTTC pLKO.1 2017 CDS 100% 0.405 0.284 N MIDN n/a
7 TRCN0000162682 CATCGAGAGCTTTGTGAATCA pLKO.1 1446 CDS 100% 4.950 2.970 N MIDN n/a
8 TRCN0000162464 CTGTTTCTCTTCCACTCCTAT pLKO.1 2644 3UTR 100% 4.950 2.970 N MIDN n/a
9 TRCN0000158980 GTTAATGGTTTCAGATGTGAA pLKO.1 3436 3UTR 100% 4.950 2.970 N MIDN n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_005259672.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.