Transcript: Human XM_005261017.3

PREDICTED: Homo sapiens SR-related CTD associated factor 4 (SCAF4), transcript variant X5, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
SCAF4 (57466)
Length:
4040
CDS:
408..3674

Additional Resources:

NCBI RefSeq record:
XM_005261017.3
NBCI Gene record:
SCAF4 (57466)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_005261017.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000265498 TCTACTATCGCTGGTATAAAT pLKO_005 2526 CDS 100% 15.000 21.000 N Scaf4 n/a
2 TRCN0000431193 CCGTAATGATGATAGAGATAA pLKO_005 3284 CDS 100% 13.200 18.480 N SCAF4 n/a
3 TRCN0000415295 TTTGGGCCAAGATTCTCTAAA pLKO_005 657 CDS 100% 13.200 10.560 N SCAF4 n/a
4 TRCN0000151785 CTCATCACTAAAGCTGCTATT pLKO.1 489 CDS 100% 10.800 8.640 N SCAF4 n/a
5 TRCN0000430726 AGGAATAAAGGCAGATTATAA pLKO_005 1979 CDS 100% 15.000 10.500 N SCAF4 n/a
6 TRCN0000427653 GAACTTGGTGTTACTTATATT pLKO_005 2016 CDS 100% 15.000 10.500 N SCAF4 n/a
7 TRCN0000416807 GGTGTACAGATGCTGTATTAT pLKO_005 3729 3UTR 100% 15.000 10.500 N SCAF4 n/a
8 TRCN0000428259 GTGAACCAGAAATCCATAAAG pLKO_005 1938 CDS 100% 13.200 9.240 N SCAF4 n/a
9 TRCN0000435270 TTGATTGCTTCCCTTCTATTT pLKO_005 3805 3UTR 100% 13.200 9.240 N SCAF4 n/a
10 TRCN0000155616 CCCGATCTCGATCTCAAGAAA pLKO.1 1651 CDS 100% 5.625 3.938 N SCAF4 n/a
11 TRCN0000179025 CGTCATCAGTTTGGAACTGAT pLKO.1 627 CDS 100% 0.495 0.347 N SCAF4 n/a
12 TRCN0000431638 TAATTAGAAGTGCTCTCTATT pLKO_005 3929 3UTR 100% 13.200 7.920 N SCAF4 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_005261017.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.