Transcript: Human XM_005262945.3

PREDICTED: Homo sapiens ankyrin 2 (ANK2), transcript variant X11, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
ANK2 (287)
Length:
14415
CDS:
101..12319

Additional Resources:

NCBI RefSeq record:
XM_005262945.3
NBCI Gene record:
ANK2 (287)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_005262945.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000064911 GCTTGGTTACACACCTTTAAT pLKO.1 2278 CDS 100% 15.000 21.000 N ANK2 n/a
2 TRCN0000064909 GCTAGGAAAGACGACACCAAA pLKO.1 698 CDS 100% 4.950 3.960 N ANK2 n/a
3 TRCN0000064908 CCACAGAAATTCGTTCAGAAA pLKO.1 6810 CDS 100% 4.950 3.465 N ANK2 n/a
4 TRCN0000064912 GCACCAGATAATAGAAGCAAA pLKO.1 10148 CDS 100% 4.950 3.465 N ANK2 n/a
5 TRCN0000064910 CCCATCATACAAGAACCCGAA pLKO.1 11471 CDS 100% 2.160 1.512 N ANK2 n/a
Download CSV

shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_005262945.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

Download CSV

All ORF constructs matching this transcript

No results found.