Transcript: Human XM_005265077.5

PREDICTED: Homo sapiens NFKB inhibitor interacting Ras like 1 (NKIRAS1), transcript variant X5, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
NKIRAS1 (28512)
Length:
4003
CDS:
281..859

Additional Resources:

NCBI RefSeq record:
XM_005265077.5
NBCI Gene record:
NKIRAS1 (28512)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_005265077.5, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000047523 GAATGGAAGATTGCGAAACAA pLKO.1 375 CDS 100% 5.625 4.500 N NKIRAS1 n/a
2 TRCN0000359040 TCTGTGAACATGGAGTAATAT pLKO_005 910 3UTR 100% 15.000 10.500 N NKIRAS1 n/a
3 TRCN0000358954 TTCCTAAGGAAGTCAATTAAT pLKO_005 979 3UTR 100% 15.000 10.500 N NKIRAS1 n/a
4 TRCN0000359041 AGAAACAGACCGAGGAGTAAA pLKO_005 421 CDS 100% 13.200 9.240 N NKIRAS1 n/a
5 TRCN0000047525 CAGCTCCTTTATGGAAATCAT pLKO.1 347 CDS 100% 5.625 3.938 N NKIRAS1 n/a
6 TRCN0000047526 AGGGAACTCTAATTCTGAGAA pLKO.1 835 CDS 100% 4.950 3.465 N NKIRAS1 n/a
7 TRCN0000047527 CTCTGATTGAACCATTCACTT pLKO.1 747 CDS 100% 4.950 3.465 N NKIRAS1 n/a
8 TRCN0000047524 GTGAATAACCTTGAATCCTTT pLKO.1 542 CDS 100% 4.950 3.465 N NKIRAS1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_005265077.5, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.