Transcript: Human XM_005268205.1

PREDICTED: Homo sapiens ELM2 and Myb/SANT domain containing 1 (ELMSAN1), transcript variant X2, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
ELMSAN1 (91748)
Length:
7360
CDS:
340..3639

Additional Resources:

NCBI RefSeq record:
XM_005268205.1
NBCI Gene record:
ELMSAN1 (91748)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_005268205.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000425307 ACCATCCGCTGGCAACTTATC pLKO_005 2795 CDS 100% 10.800 15.120 N ELMSAN1 n/a
2 TRCN0000239170 CTACTTCAATGCCATCATATC pLKO_005 2346 CDS 100% 10.800 8.640 N Elmsan1 n/a
3 TRCN0000413328 GAGGTTGAAGTGGATATTAAG pLKO_005 3043 CDS 100% 13.200 9.240 N ELMSAN1 n/a
4 TRCN0000434306 CTTTCCACGCAGCCAAGAAAC pLKO_005 938 CDS 100% 10.800 7.560 N ELMSAN1 n/a
5 TRCN0000436424 GACTAACAGTGCTGAAGTAAC pLKO_005 2430 CDS 100% 10.800 7.560 N ELMSAN1 n/a
6 TRCN0000425273 CCGCTATGTGCGACCAATGAT pLKO_005 867 CDS 100% 5.625 3.938 N ELMSAN1 n/a
7 TRCN0000168112 CCAGAATCAGGAGAACACTTT pLKO.1 3432 CDS 100% 4.950 3.465 N ELMSAN1 n/a
8 TRCN0000168272 CCTCTACTTCAATGCCATCAT pLKO.1 2343 CDS 100% 4.950 3.465 N ELMSAN1 n/a
9 TRCN0000426636 GAGTTCTACTACACCTACAAG pLKO_005 2944 CDS 100% 4.950 3.465 N ELMSAN1 n/a
10 TRCN0000168769 GACATTCAGTAAGACCCAGAA pLKO.1 3417 CDS 100% 4.050 2.835 N ELMSAN1 n/a
11 TRCN0000430310 GGCAACCTGTTCCTACATCAC pLKO_005 1456 CDS 100% 4.050 2.835 N ELMSAN1 n/a
12 TRCN0000431824 GTATTGGCCTCAACTACCAAG pLKO_005 1822 CDS 100% 4.050 2.835 N ELMSAN1 n/a
13 TRCN0000168745 GTTCAACAAAGGCATTGCCAT pLKO.1 2859 CDS 100% 2.640 1.848 N ELMSAN1 n/a
Download CSV

shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_005268205.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

Download CSV

All ORF constructs matching this transcript

No results found.