Transcript: Human XM_005274500.4

PREDICTED: Homo sapiens shroom family member 2 (SHROOM2), transcript variant X1, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
SHROOM2 (357)
Length:
7494
CDS:
141..4988

Additional Resources:

NCBI RefSeq record:
XM_005274500.4
NBCI Gene record:
SHROOM2 (357)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_005274500.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000163141 GCACCTTAGATCACTTCAGCT pLKO.1 640 CDS 100% 2.640 3.696 N SHROOM2 n/a
2 TRCN0000162637 CCACCAATTCTACCTACTACA pLKO.1 4318 CDS 100% 4.950 3.960 N SHROOM2 n/a
3 TRCN0000158903 CCCAAGGAATTTCAGAGTATT pLKO.1 6938 3UTR 100% 13.200 9.240 N SHROOM2 n/a
4 TRCN0000160259 CCAGTAGTAATGTGCTTGTTA pLKO.1 5765 3UTR 100% 5.625 3.938 N SHROOM2 n/a
5 TRCN0000163923 GATGAGATCGTCGGCATCAAT pLKO.1 354 CDS 100% 5.625 3.938 N SHROOM2 n/a
6 TRCN0000160717 CCCACATTCTCTGAACTATCT pLKO.1 3108 CDS 100% 4.950 3.465 N SHROOM2 n/a
7 TRCN0000163225 GAGCGCATCGTCTTTGACATT pLKO.1 4803 CDS 100% 4.950 3.465 N SHROOM2 n/a
8 TRCN0000163258 GCTGGAGAAAGACCAGATCAA pLKO.1 3863 CDS 100% 4.950 3.465 N SHROOM2 n/a
9 TRCN0000164543 CAGTCTGGTATGTTCCCGATA pLKO.1 1039 CDS 100% 4.050 2.835 N SHROOM2 n/a
10 TRCN0000162934 GACATTGGTCTCTCAGGGTTT pLKO.1 375 CDS 100% 4.050 2.835 N SHROOM2 n/a
11 TRCN0000162295 CCGATAAGAAGAAAGCACCAT pLKO.1 1054 CDS 100% 2.640 1.848 N SHROOM2 n/a
12 TRCN0000163654 GCACCTATAAAGACCACCTGA pLKO.1 2173 CDS 100% 2.640 1.848 N SHROOM2 n/a
13 TRCN0000162749 CCCAGCAGAAATCATCATCAT pLKO.1 5502 3UTR 100% 4.950 2.970 N SHROOM2 n/a
Download CSV

shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_005274500.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

Download CSV

All ORF constructs matching this transcript

No results found.