Transcript: Mouse XM_006496158.2

PREDICTED: Mus musculus REV1, DNA directed polymerase (Rev1), transcript variant X5, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Rev1 (56210)
Length:
4125
CDS:
75..3824

Additional Resources:

NCBI RefSeq record:
XM_006496158.2
NBCI Gene record:
Rev1 (56210)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_006496158.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000379301 GTTGCTAGCAGGCTATCTTTA pLKO_005 819 CDS 100% 13.200 18.480 N Rev1 n/a
2 TRCN0000366597 TATCAGTGGGTATACGAAATA pLKO_005 1354 CDS 100% 13.200 18.480 N Rev1 n/a
3 TRCN0000420006 TATCAGTGGGTATACGAAATA pLKO_005 1354 CDS 100% 13.200 18.480 N REV1 n/a
4 TRCN0000120300 GCCCTCCGTATTGAAATCAAA pLKO.1 1845 CDS 100% 5.625 7.875 N Rev1 n/a
5 TRCN0000120301 GCACGTTGATATGGACTGCTT pLKO.1 1328 CDS 100% 2.640 3.696 N Rev1 n/a
6 TRCN0000155765 CGACCAGAATGGATTGTGGAA pLKO.1 402 CDS 100% 2.640 2.112 N REV1 n/a
7 TRCN0000366596 AGCTCAACAACAGGGTAAATC pLKO_005 562 CDS 100% 13.200 9.240 N Rev1 n/a
8 TRCN0000416910 AGCTCAACAACAGGGTAAATC pLKO_005 562 CDS 100% 13.200 9.240 N REV1 n/a
9 TRCN0000376841 GATGTTGCATGGAGGTCAATA pLKO_005 287 CDS 100% 13.200 9.240 N Rev1 n/a
10 TRCN0000422818 GATGTTGCATGGAGGTCAATA pLKO_005 287 CDS 100% 13.200 9.240 N REV1 n/a
11 TRCN0000375407 GCAAGCTGTTCCGTATGATTT pLKO_005 1676 CDS 100% 13.200 9.240 N Rev1 n/a
12 TRCN0000120297 CAGCAGTGCTTGTGAGGTATT pLKO.1 3862 3UTR 100% 10.800 7.560 N Rev1 n/a
13 TRCN0000120298 GCCGAGATCAACTATGGAATA pLKO.1 2208 CDS 100% 10.800 7.560 N Rev1 n/a
14 TRCN0000120299 GCTGGAATGAAGACGGTGTAA pLKO.1 637 CDS 100% 4.950 3.465 N Rev1 n/a
15 TRCN0000420632 TCAACTATGGAATAAGGTTTA pLKO_005 2215 CDS 100% 10.800 7.560 N REV1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_006496158.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.