Transcript: Mouse XM_006498016.3

PREDICTED: Mus musculus patatin-like phospholipase domain containing 7 (Pnpla7), transcript variant X4, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Pnpla7 (241274)
Length:
5307
CDS:
976..5043

Additional Resources:

NCBI RefSeq record:
XM_006498016.3
NBCI Gene record:
Pnpla7 (241274)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_006498016.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000086306 CCAAGAGGATTCTGCGCTTTA pLKO.1 1334 CDS 100% 10.800 8.640 N Pnpla7 n/a
2 TRCN0000301876 CCAAGAGGATTCTGCGCTTTA pLKO_005 1334 CDS 100% 10.800 8.640 N Pnpla7 n/a
3 TRCN0000086307 CATGTCCTTGTCAGGCTATAT pLKO.1 4230 CDS 100% 13.200 9.240 N Pnpla7 n/a
4 TRCN0000301872 CATGTCCTTGTCAGGCTATAT pLKO_005 4230 CDS 100% 13.200 9.240 N Pnpla7 n/a
5 TRCN0000086303 CCCATTCCTTAGAGGCTACTT pLKO.1 5094 3UTR 100% 4.950 3.465 N Pnpla7 n/a
6 TRCN0000301942 CCCATTCCTTAGAGGCTACTT pLKO_005 5094 3UTR 100% 4.950 3.465 N Pnpla7 n/a
7 TRCN0000086305 CGGGTGGCATTTCTTCATGTT pLKO.1 2470 CDS 100% 4.950 3.465 N Pnpla7 n/a
8 TRCN0000301875 CGGGTGGCATTTCTTCATGTT pLKO_005 2470 CDS 100% 4.950 3.465 N Pnpla7 n/a
9 TRCN0000086304 GCAGCTAATCTTGCTGCACAA pLKO.1 3597 CDS 100% 0.405 0.284 N Pnpla7 n/a
10 TRCN0000301874 GCAGCTAATCTTGCTGCACAA pLKO_005 3597 CDS 100% 0.405 0.284 N Pnpla7 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_006498016.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.