Transcript: Mouse XM_006498218.3

PREDICTED: Mus musculus N-myc (and STAT) interactor (Nmi), transcript variant X1, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Nmi (64685)
Length:
1625
CDS:
603..1547

Additional Resources:

NCBI RefSeq record:
XM_006498218.3
NBCI Gene record:
Nmi (64685)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_006498218.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000100979 CCACTTCCAACGGAAGAATAA pLKO.1 1439 CDS 100% 13.200 9.240 N Nmi n/a
2 TRCN0000234061 CTGGCGTTGTTGACAAGATTT pLKO_005 1234 CDS 100% 13.200 9.240 N Nmi n/a
3 TRCN0000218598 CTTTCAAGTGAGCTCACAAAT pLKO_005 872 CDS 100% 13.200 9.240 N Nmi n/a
4 TRCN0000234062 ACAGTGCTTCTGACCGGATTA pLKO_005 1371 CDS 100% 10.800 7.560 N Nmi n/a
5 TRCN0000100976 CGAAGTGGAAAGCGTGGATTA pLKO.1 1172 CDS 100% 10.800 7.560 N Nmi n/a
6 TRCN0000234059 CTCAGCAGAGATGGACGATAT pLKO_005 647 CDS 100% 10.800 7.560 N Nmi n/a
7 TRCN0000100975 CCATGTATAGAACGATGCTTA pLKO.1 1314 CDS 100% 4.950 3.465 N Nmi n/a
8 TRCN0000100978 CGGATGCCAGAGAATTCCAAA pLKO.1 763 CDS 100% 0.000 0.000 N Nmi n/a
9 TRCN0000325052 CGGATGCCAGAGAATTCCAAA pLKO_005 763 CDS 100% 0.000 0.000 N Nmi n/a
10 TRCN0000100977 GAAGTGGAAAGCGTGGATTAT pLKO.1 1173 CDS 100% 13.200 7.920 N Nmi n/a
11 TRCN0000234060 GAAGTGGAAAGCGTGGATTAT pLKO_005 1173 CDS 100% 13.200 7.920 N Nmi n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_006498218.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.