Transcript: Mouse XM_006499333.1

PREDICTED: Mus musculus phosphatidylinositol glycan anchor biosynthesis, class U (Pigu), transcript variant X1, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Pigu (228812)
Length:
1562
CDS:
214..1269

Additional Resources:

NCBI RefSeq record:
XM_006499333.1
NBCI Gene record:
Pigu (228812)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_006499333.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000124971 GCCATCAAATTAAAGGAGCAT pLKO.1 874 CDS 100% 2.640 3.696 N Pigu n/a
2 TRCN0000331961 GCCATCAAATTAAAGGAGCAT pLKO_005 874 CDS 100% 2.640 3.696 N Pigu n/a
3 TRCN0000124970 CGGCAGTACATCCCTGTTAAA pLKO.1 589 CDS 100% 13.200 10.560 N Pigu n/a
4 TRCN0000309565 CGGCAGTACATCCCTGTTAAA pLKO_005 589 CDS 100% 13.200 10.560 N Pigu n/a
5 TRCN0000124972 GCCCTGTTCTATCTCCTAAAT pLKO.1 382 CDS 100% 13.200 9.240 N Pigu n/a
6 TRCN0000309566 GCCCTGTTCTATCTCCTAAAT pLKO_005 382 CDS 100% 13.200 9.240 N Pigu n/a
7 TRCN0000124969 CCTCAGGCAGAAGAAGTTCAA pLKO.1 1358 3UTR 100% 4.950 3.465 N Pigu n/a
8 TRCN0000309631 CCTCAGGCAGAAGAAGTTCAA pLKO_005 1358 3UTR 100% 4.950 3.465 N Pigu n/a
9 TRCN0000128366 GTTTCAGATCAACGTCTTCTT pLKO.1 837 CDS 100% 4.950 3.465 N PIGU n/a
10 TRCN0000124973 CCTGCTCATCTCTGACTACTT pLKO.1 1158 CDS 100% 4.950 2.970 N Pigu n/a
11 TRCN0000331960 CCTGCTCATCTCTGACTACTT pLKO_005 1158 CDS 100% 4.950 2.970 N Pigu n/a
12 TRCN0000129318 CCTGCATCATCATCGTCTGTT pLKO.1 1037 CDS 100% 4.950 3.465 N PIGU n/a
Download CSV

shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_006499333.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

Download CSV

All ORF constructs matching this transcript

No results found.