Transcript: Mouse XM_006500620.3

PREDICTED: Mus musculus protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 2 (Pcmtd2), transcript variant X1, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Pcmtd2 (245867)
Length:
11171
CDS:
7882..9030

Additional Resources:

NCBI RefSeq record:
XM_006500620.3
NBCI Gene record:
Pcmtd2 (245867)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_006500620.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000249277 CTATTGATCGAGCAGATTATT pLKO_005 7985 CDS 100% 15.000 21.000 N Pcmtd2 n/a
2 TRCN0000249278 TTGTCAGTATGATCGTGTTTA pLKO_005 8352 CDS 100% 13.200 18.480 N Pcmtd2 n/a
3 TRCN0000257882 AGCGACAGCTTTGACAAATTT pLKO_005 8275 CDS 100% 15.000 10.500 N Pcmtd2 n/a
4 TRCN0000249279 CCAAGTTAGAGTACTAATTTA pLKO_005 10097 3UTR 100% 15.000 10.500 N Pcmtd2 n/a
5 TRCN0000215894 CAACGATGAGCTCATTGATAA pLKO.1 7911 CDS 100% 13.200 9.240 N Pcmtd2 n/a
6 TRCN0000249280 TGAAGAACACACCTATGTTTA pLKO_005 8756 CDS 100% 13.200 9.240 N Pcmtd2 n/a
7 TRCN0000179539 GCTCCAGATTGTTGTCAGTAT pLKO.1 8341 CDS 100% 4.950 3.465 N Pcmtd2 n/a
8 TRCN0000216327 GAAGAACACACCTATGTTTAA pLKO.1 8757 CDS 100% 13.200 7.920 N Pcmtd2 n/a
9 TRCN0000181017 GCACATGCCTTTAATCCCAAT pLKO.1 3496 5UTR 100% 4.050 2.025 Y Map6d1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_006500620.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.