Transcript: Mouse XM_006501329.2

PREDICTED: Mus musculus glutamyl-tRNA(Gln) amidotransferase, subunit B (Gatb), transcript variant X1, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Gatb (229487)
Length:
2023
CDS:
43..1914

Additional Resources:

NCBI RefSeq record:
XM_006501329.2
NBCI Gene record:
Gatb (229487)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_006501329.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000426010 ACTCGTTCATTTGATTATAAG pLKO_005 1174 CDS 100% 13.200 18.480 N Gatb n/a
2 TRCN0000421173 CTCAGCAGGTGATCAATATTG pLKO_005 1316 CDS 100% 13.200 10.560 N Gatb n/a
3 TRCN0000229355 TGAGAGTGGATGCCAATATAT pLKO_005 1010 CDS 100% 15.000 10.500 N GATB n/a
4 TRCN0000218515 CAGATTTCCTCCAACTCTAAA pLKO_005 262 CDS 100% 13.200 9.240 N GATB n/a
5 TRCN0000429737 CAGATTTCCTCCAACTCTAAA pLKO_005 262 CDS 100% 13.200 9.240 N Gatb n/a
6 TRCN0000429374 ACTTGACCTACTGTATCTATC pLKO_005 728 CDS 100% 10.800 7.560 N Gatb n/a
7 TRCN0000427013 ATTTGAACAGAGCCGGAATTG pLKO_005 863 CDS 100% 10.800 7.560 N Gatb n/a
8 TRCN0000430277 GGTGTCAGGACTGAGGTAAAG pLKO_005 1057 CDS 100% 10.800 7.560 N Gatb n/a
9 TRCN0000103342 CCAAAGCCATAGATTATGAAA pLKO.1 1103 CDS 100% 5.625 3.938 N Gatb n/a
10 TRCN0000103343 GCACAGCTTTGCGTTACTGAA pLKO.1 1416 CDS 100% 4.950 3.465 N Gatb n/a
11 TRCN0000103344 CGGAAGCACTACTTCTACTCA pLKO.1 649 CDS 100% 3.000 2.100 N Gatb n/a
12 TRCN0000103341 CCACATAAACAAGAAGTCCTT pLKO.1 621 CDS 100% 2.640 1.848 N Gatb n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_006501329.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.