Transcript: Mouse XM_006501680.3

PREDICTED: Mus musculus outer dense fiber of sperm tails 2-like (Odf2l), transcript variant X7, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Odf2l (52184)
Length:
2986
CDS:
589..2595

Additional Resources:

NCBI RefSeq record:
XM_006501680.3
NBCI Gene record:
Odf2l (52184)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_006501680.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000191129 CGTGTGAAATTAGCCTTAGAA pLKO.1 907 CDS 100% 5.625 7.875 N Odf2l n/a
2 TRCN0000337610 GATCGTCTACAGCGCCAAATT pLKO_005 1141 CDS 100% 13.200 10.560 N Odf2l n/a
3 TRCN0000189595 CGCCAAATTCAGAAGAGGGAA pLKO.1 1153 CDS 100% 2.640 2.112 N Odf2l n/a
4 TRCN0000215567 GCATTGAAGTCTAGTTTAATT pLKO.1 2744 3UTR 100% 15.000 10.500 N Odf2l n/a
5 TRCN0000337608 TAGCCTTAGAACATCTTATTA pLKO_005 917 CDS 100% 15.000 10.500 N Odf2l n/a
6 TRCN0000337609 TTTGAACAGAACGACATATTA pLKO_005 862 CDS 100% 15.000 10.500 N Odf2l n/a
7 TRCN0000337606 AGGTTAGCAGTATTAGAATTT pLKO_005 2635 3UTR 100% 13.200 9.240 N Odf2l n/a
8 TRCN0000200725 GCTATCTGCTTGAAGGAAATA pLKO.1 2482 CDS 100% 13.200 9.240 N Odf2l n/a
9 TRCN0000200797 GAACTTGTAGAACTGCAAGAA pLKO.1 1684 CDS 100% 4.950 3.465 N Odf2l n/a
10 TRCN0000191180 CTTTAAGGAATAGTAGCTCTT pLKO.1 2698 3UTR 100% 4.050 2.835 N Odf2l n/a
11 TRCN0000191543 GTTGACAAGATGAACACTAAA pLKO.1 2449 CDS 100% 13.200 7.920 N Odf2l n/a
12 TRCN0000337607 TTTCCTATGTAACGATGTTTA pLKO_005 2570 CDS 100% 13.200 7.920 N Odf2l n/a
13 TRCN0000201380 GAGAACAGAAACCTTGAGGAA pLKO.1 1009 CDS 100% 2.640 1.584 N Odf2l n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_006501680.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.