Transcript: Mouse XM_006502227.3

PREDICTED: Mus musculus regulation of nuclear pre-mRNA domain containing 2 (Rprd2), transcript variant X1, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Rprd2 (75137)
Length:
8730
CDS:
1040..5395

Additional Resources:

NCBI RefSeq record:
XM_006502227.3
NBCI Gene record:
Rprd2 (75137)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_006502227.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000247264 TTCGGTCAGTACAGGTAATAA pLKO_005 5779 3UTR 100% 15.000 21.000 N Rprd2 n/a
2 TRCN0000247260 ACCTTCGCTAACCGAGTAAAC pLKO_005 1919 CDS 100% 10.800 8.640 N Rprd2 n/a
3 TRCN0000247261 CCATCCGTCTCTAAGTCTATA pLKO_005 1379 CDS 100% 13.200 9.240 N Rprd2 n/a
4 TRCN0000247263 GTTATCATAACGCAGCTAATA pLKO_005 4305 CDS 100% 13.200 9.240 N Rprd2 n/a
5 TRCN0000247262 TGCAATCATATTTCGTGAATC pLKO_005 1315 CDS 100% 10.800 7.560 N Rprd2 n/a
6 TRCN0000143930 CCAACAGTTTCAACTCAACAT pLKO.1 4587 CDS 100% 4.950 3.465 N RPRD2 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_006502227.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.