Transcript: Mouse XM_006502898.3

PREDICTED: Mus musculus ST3 beta-galactoside alpha-2,3-sialyltransferase 3 (St3gal3), transcript variant X9, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
St3gal3 (20441)
Length:
2087
CDS:
116..1192

Additional Resources:

NCBI RefSeq record:
XM_006502898.3
NBCI Gene record:
St3gal3 (20441)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_006502898.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000018836 CGGATTGACGACTATGACATT pLKO.1 593 CDS 100% 4.950 6.930 N St3gal3 n/a
2 TRCN0000018835 GCACGTGTCATCACTGACTTA pLKO.1 1157 CDS 100% 4.950 6.930 N St3gal3 n/a
3 TRCN0000277418 ATGCAGCGACCTGAGCAATAT pLKO_005 704 CDS 100% 13.200 10.560 N St3gal3 n/a
4 TRCN0000018833 CGCTGCATCATTGTAGGCAAT pLKO.1 539 CDS 100% 4.050 3.240 N St3gal3 n/a
5 TRCN0000277416 CTCCTGAAGCTGGACTCTAAA pLKO_005 251 CDS 100% 13.200 9.240 N St3gal3 n/a
6 TRCN0000232801 GTGTTTGGTGTATTATCATTT pLKO_005 1490 3UTR 100% 13.200 9.240 N ST3GAL3 n/a
7 TRCN0000277455 GTGTTTGGTGTATTATCATTT pLKO_005 1490 3UTR 100% 13.200 9.240 N St3gal3 n/a
8 TRCN0000035716 GCCATCTTGTCAGTCACCAAA pLKO.1 476 CDS 100% 4.950 3.465 N ST3GAL3 n/a
9 TRCN0000018834 GCTGAAGTACATCGTCTACAA pLKO.1 778 CDS 100% 4.950 3.465 N St3gal3 n/a
10 TRCN0000277417 GCTGAAGTACATCGTCTACAA pLKO_005 778 CDS 100% 4.950 3.465 N St3gal3 n/a
11 TRCN0000018832 GCCACCAAGTACGCAAACTTT pLKO.1 287 CDS 100% 5.625 3.375 N St3gal3 n/a
12 TRCN0000277466 GCCACCAAGTACGCAAACTTT pLKO_005 287 CDS 100% 5.625 3.375 N St3gal3 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_006502898.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_01534 pDONR223 100% 88% 93.3% None (many diffs) n/a
2 ccsbBroad304_01534 pLX_304 0% 88% 93.3% V5 (many diffs) n/a
3 TRCN0000492269 CGTGAGCGCATCGCAAAACCGGGC pLX_317 35.8% 88% 93.3% V5 (many diffs) n/a
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