Transcript: Mouse XM_006505333.3

PREDICTED: Mus musculus tetraspanin 9 (Tspan9), transcript variant X3, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Tspan9 (109246)
Length:
4007
CDS:
256..975

Additional Resources:

NCBI RefSeq record:
XM_006505333.3
NBCI Gene record:
Tspan9 (109246)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_006505333.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000381983 CACATCCACCGGACAGGTAAA pLKO_005 940 CDS 100% 10.800 15.120 N Tspan9 n/a
2 TRCN0000380885 TGGACAAGGTGAACGAGAATG pLKO_005 578 CDS 100% 10.800 7.560 N Tspan9 n/a
3 TRCN0000094959 CACACTGACACTTGTTCCTAT pLKO.1 1277 3UTR 100% 4.950 3.465 N Tspan9 n/a
4 TRCN0000325584 CACACTGACACTTGTTCCTAT pLKO_005 1277 3UTR 100% 4.950 3.465 N Tspan9 n/a
5 TRCN0000094960 GCTGGCAGAGTTGATTCTGAT pLKO.1 537 CDS 100% 4.950 3.465 N Tspan9 n/a
6 TRCN0000325508 GCTGGCAGAGTTGATTCTGAT pLKO_005 537 CDS 100% 4.950 3.465 N Tspan9 n/a
7 TRCN0000094961 GCTGTGGTTTGATGACAACAA pLKO.1 840 CDS 100% 4.950 3.465 N Tspan9 n/a
8 TRCN0000325509 GCTGTGGTTTGATGACAACAA pLKO_005 840 CDS 100% 4.950 3.465 N Tspan9 n/a
9 TRCN0000094962 GTACACGATGTTCCTCTTCAA pLKO.1 285 CDS 100% 4.950 3.465 N Tspan9 n/a
10 TRCN0000325510 GTACACGATGTTCCTCTTCAA pLKO_005 285 CDS 100% 4.950 3.465 N Tspan9 n/a
11 TRCN0000094963 CATCATGCAGATCCTGGGAAT pLKO.1 894 CDS 100% 4.050 2.835 N Tspan9 n/a
12 TRCN0000381466 GAACATCATCCAGGCCGAGAT pLKO_005 669 CDS 100% 4.050 2.835 N Tspan9 n/a
13 TRCN0000382021 TCATCGTGCTGTTGATCATCC pLKO_005 515 CDS 100% 4.050 2.835 N Tspan9 n/a
14 TRCN0000119250 CACTGACTACACAGACTGGTA pLKO.1 705 CDS 100% 2.640 1.848 N TSPAN9 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_006505333.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.