Transcript: Mouse XM_006505502.1

PREDICTED: Mus musculus epithelial membrane protein 1 (Emp1), transcript variant X1, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Emp1 (13730)
Length:
2906
CDS:
391..873

Additional Resources:

NCBI RefSeq record:
XM_006505502.1
NBCI Gene record:
Emp1 (13730)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_006505502.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000097685 GCACTCAATGTATCTTGTATA pLKO.1 1762 3UTR 100% 13.200 18.480 N Emp1 n/a
2 TRCN0000326442 GCACTCAATGTATCTTGTATA pLKO_005 1762 3UTR 100% 13.200 18.480 N Emp1 n/a
3 TRCN0000097688 GTGTCAATCTACACTCATCAT pLKO.1 727 CDS 100% 4.950 6.930 N Emp1 n/a
4 TRCN0000097689 TGTCAATCTACACTCATCATT pLKO.1 728 CDS 100% 5.625 4.500 N Emp1 n/a
5 TRCN0000326367 TGTCAATCTACACTCATCATT pLKO_005 728 CDS 100% 5.625 4.500 N Emp1 n/a
6 TRCN0000097686 CCAGCTCTTCACTATGGAGAA pLKO.1 642 CDS 100% 4.050 2.835 N Emp1 n/a
7 TRCN0000326443 CCAGCTCTTCACTATGGAGAA pLKO_005 642 CDS 100% 4.050 2.835 N Emp1 n/a
8 TRCN0000097687 CCTACGGCAATGAAGATGCTA pLKO.1 551 CDS 100% 3.000 2.100 N Emp1 n/a
9 TRCN0000326444 CCTACGGCAATGAAGATGCTA pLKO_005 551 CDS 100% 3.000 2.100 N Emp1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_006505502.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.