Transcript: Mouse XM_006505913.3

PREDICTED: Mus musculus ubiquitin-like modifier activating enzyme 3 (Uba3), transcript variant X2, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Uba3 (22200)
Length:
2280
CDS:
172..1497

Additional Resources:

NCBI RefSeq record:
XM_006505913.3
NBCI Gene record:
Uba3 (22200)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_006505913.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000039499 CGACACTTTCTACCGACAATT pLKO.1 564 CDS 100% 13.200 10.560 N Uba3 n/a
2 TRCN0000302283 CGACACTTTCTACCGACAATT pLKO_005 564 CDS 100% 13.200 10.560 N Uba3 n/a
3 TRCN0000039500 CCTTAATAACTACCTGGTATT pLKO.1 1122 CDS 100% 10.800 8.640 N Uba3 n/a
4 TRCN0000302342 CCTTAATAACTACCTGGTATT pLKO_005 1122 CDS 100% 10.800 8.640 N Uba3 n/a
5 TRCN0000007257 CCACAGACTGTACTATTCAAA pLKO.1 1462 CDS 100% 5.625 3.938 N UBA3 n/a
6 TRCN0000284845 CCACAGACTGTACTATTCAAA pLKO_005 1462 CDS 100% 5.625 3.938 N UBA3 n/a
7 TRCN0000039501 CCACATTTCAACAAGATACAA pLKO.1 535 CDS 100% 5.625 3.938 N Uba3 n/a
8 TRCN0000302341 CCACATTTCAACAAGATACAA pLKO_005 535 CDS 100% 5.625 3.938 N Uba3 n/a
9 TRCN0000039503 CCCAGAACACTGTATCGAGTA pLKO.1 843 CDS 100% 4.050 2.835 N Uba3 n/a
10 TRCN0000302340 CCCAGAACACTGTATCGAGTA pLKO_005 843 CDS 100% 4.050 2.835 N Uba3 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_006505913.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.