Transcript: Mouse XM_006506006.1

PREDICTED: Mus musculus FERM domain containing 4B (Frmd4b), transcript variant X5, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Frmd4b (232288)
Length:
4207
CDS:
651..2714

Additional Resources:

NCBI RefSeq record:
XM_006506006.1
NBCI Gene record:
Frmd4b (232288)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_006506006.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000054994 CGGTTACTATATCGCTGGATA pLKO.1 2015 CDS 100% 4.950 3.960 N Frmd4b n/a
2 TRCN0000317689 CGGTTACTATATCGCTGGATA pLKO_005 2015 CDS 100% 4.950 3.960 N Frmd4b n/a
3 TRCN0000054996 CCAGTCAAGCTCCGAGTATTA pLKO.1 1811 CDS 100% 13.200 9.240 N Frmd4b n/a
4 TRCN0000054995 CCCGAAGGATTTCAGTGTCTA pLKO.1 553 5UTR 100% 4.950 3.465 N Frmd4b n/a
5 TRCN0000317688 CCCGAAGGATTTCAGTGTCTA pLKO_005 553 5UTR 100% 4.950 3.465 N Frmd4b n/a
Download CSV

shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_006506006.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

Download CSV

All ORF constructs matching this transcript

No results found.