Transcript: Mouse XM_006506713.3

PREDICTED: Mus musculus leucine-rich repeats and guanylate kinase domain containing (Lrguk), transcript variant X1, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Lrguk (74354)
Length:
10937
CDS:
468..4493

Additional Resources:

NCBI RefSeq record:
XM_006506713.3
NBCI Gene record:
Lrguk (74354)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

Clone ID Target Seq Vector PAM Seq Cut Position Cut % of CDS Length Exon On Target Score[?] Other Matching Genes Orig. Target Gene[?] Notes Addgene[?]
1 BRDN0001487051 AGATTGAGAACTCGAAGGAT pXPR_003 AGG 984 24% 8 1.0244 Lrguk LRGUK 78086
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shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_006506713.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000360815 ATACTCTCACTCAACTAATTT pLKO_005 1111 CDS 100% 15.000 21.000 N Lrguk n/a
2 TRCN0000360744 AGATCGAGTTGATTATCATTT pLKO_005 1841 CDS 100% 13.200 18.480 N Lrguk n/a
3 TRCN0000360743 AGTCGCGCAGAAATCGAAATT pLKO_005 2118 CDS 100% 13.200 18.480 N Lrguk n/a
4 TRCN0000360741 TACTGGTTCTTCGTGATATAT pLKO_005 1500 CDS 100% 15.000 12.000 N Lrguk n/a
5 TRCN0000221762 CCTGGAGGATAACAAGATTAA pLKO.1 1391 CDS 100% 13.200 9.240 N Lrguk n/a
6 TRCN0000221763 GCTGACTACCTTCTTCAATTT pLKO.1 1013 CDS 100% 13.200 9.240 N Lrguk n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_006506713.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.