Transcript: Mouse XM_006506960.3

PREDICTED: Mus musculus solute carrier organic anion transporter family, member 1a4 (Slco1a4), transcript variant X1, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Slco1a4 (28250)
Length:
3814
CDS:
279..2291

Additional Resources:

NCBI RefSeq record:
XM_006506960.3
NBCI Gene record:
Slco1a4 (28250)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_006506960.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000079887 CACGTCTGTAGTTGGGCTTAT pLKO.1 440 CDS 100% 10.800 15.120 N Slco1a4 n/a
2 TRCN0000079886 GCATGAGAATATTAGGTGGTA pLKO.1 1939 CDS 100% 2.640 3.696 N Slco1a4 n/a
3 TRCN0000435993 CTATTGCAGAAAGACTATTTA pLKO_005 2604 3UTR 100% 15.000 10.500 N Slco1a4 n/a
4 TRCN0000432232 TGTTAAGCCACACTGAAATAA pLKO_005 2683 3UTR 100% 15.000 10.500 N Slco1a4 n/a
5 TRCN0000425606 AGGCATTTCTGTTGGCATTAA pLKO_005 337 CDS 100% 13.200 9.240 N Slco1a4 n/a
6 TRCN0000413307 AGGTCAATGCCTTTATCAATT pLKO_005 1261 CDS 100% 13.200 9.240 N Slco1a4 n/a
7 TRCN0000079884 GCAATCCGATTTACATGATTT pLKO.1 1219 CDS 100% 13.200 9.240 N Slco1a4 n/a
8 TRCN0000079883 CGGAACTCTTATCTTATTCTT pLKO.1 2368 3UTR 100% 5.625 3.938 N Slco1a4 n/a
9 TRCN0000079885 CCTCAAATAGCTTTGTGTGTA pLKO.1 655 CDS 100% 4.950 3.465 N Slco1a4 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_006506960.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.