Transcript: Mouse XM_006507077.3

PREDICTED: Mus musculus coiled-coil domain containing 91 (Ccdc91), transcript variant X6, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Ccdc91 (67015)
Length:
2548
CDS:
382..1620

Additional Resources:

NCBI RefSeq record:
XM_006507077.3
NBCI Gene record:
Ccdc91 (67015)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_006507077.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000126334 CGGATCTAACTCTCTGCTATT pLKO.1 1892 3UTR 100% 10.800 15.120 N Ccdc91 n/a
2 TRCN0000287962 CGGATCTAACTCTCTGCTATT pLKO_005 1892 3UTR 100% 10.800 15.120 N Ccdc91 n/a
3 TRCN0000295251 TATCAAGTCTGGAGACTAAAC pLKO_005 707 CDS 100% 10.800 15.120 N Ccdc91 n/a
4 TRCN0000126335 GCGCTGAGCATTATAGTGGAT pLKO.1 919 CDS 100% 2.640 2.112 N Ccdc91 n/a
5 TRCN0000287964 GCGCTGAGCATTATAGTGGAT pLKO_005 919 CDS 100% 2.640 2.112 N Ccdc91 n/a
6 TRCN0000295252 GAAAGTTCATGCCGAAGAAAG pLKO_005 1284 CDS 100% 10.800 7.560 N Ccdc91 n/a
7 TRCN0000126338 ACATCTGAACATCCCTCTCTT pLKO.1 582 CDS 100% 4.950 3.465 N Ccdc91 n/a
8 TRCN0000126336 CAATGAAAGATGTCATCACTA pLKO.1 1232 CDS 100% 4.950 3.465 N Ccdc91 n/a
9 TRCN0000126337 GAAGCAATATGTGTCTGCAAT pLKO.1 993 CDS 100% 4.950 3.465 N Ccdc91 n/a
10 TRCN0000287963 GAAGCAATATGTGTCTGCAAT pLKO_005 993 CDS 100% 4.950 3.465 N Ccdc91 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_006507077.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.