Transcript: Mouse XM_006508065.3

PREDICTED: Mus musculus transforming, acidic coiled-coil containing protein 2 (Tacc2), transcript variant X1, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Tacc2 (57752)
Length:
12303
CDS:
131..8917

Additional Resources:

NCBI RefSeq record:
XM_006508065.3
NBCI Gene record:
Tacc2 (57752)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_006508065.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000123976 CGGACCTGTCTAACTTTGTAA pLKO.1 7464 CDS 100% 5.625 7.875 N Tacc2 n/a
2 TRCN0000353723 CGGACCTGTCTAACTTTGTAA pLKO_005 7464 CDS 100% 5.625 7.875 N Tacc2 n/a
3 TRCN0000123975 CGGGACTTACAACTTAGACTT pLKO.1 6076 CDS 100% 4.950 6.930 N Tacc2 n/a
4 TRCN0000123974 CGTCTCCTTTCACTTCCGTAT pLKO.1 9001 3UTR 100% 4.050 5.670 N Tacc2 n/a
5 TRCN0000323630 CGTCTCCTTTCACTTCCGTAT pLKO_005 9001 3UTR 100% 4.050 5.670 N Tacc2 n/a
6 TRCN0000123977 CCCTTGTGAATGCAGCAACAA pLKO.1 7809 CDS 100% 4.950 3.465 N Tacc2 n/a
7 TRCN0000323561 CCCTTGTGAATGCAGCAACAA pLKO_005 7809 CDS 100% 4.950 3.465 N Tacc2 n/a
8 TRCN0000123978 GCTGGACTACAGAAACTCCTA pLKO.1 7609 CDS 100% 2.640 1.848 N Tacc2 n/a
9 TRCN0000323560 GCTGGACTACAGAAACTCCTA pLKO_005 7609 CDS 100% 2.640 1.848 N Tacc2 n/a
10 TRCN0000423587 ATTCGAGTCTTAACCATATTT pLKO_005 12095 3UTR 100% 15.000 7.500 Y H2afz n/a
11 TRCN0000432382 GTACTTGAGTTGGCAGGAAAT pLKO_005 11745 3UTR 100% 10.800 5.400 Y H2afz n/a
12 TRCN0000093043 CCTTATTATCTCAGGACTCTA pLKO.1 11939 3UTR 100% 4.950 2.475 Y H2afz n/a
13 TRCN0000106535 GCCTGGTCTACAAAGTGAGTT pLKO.1 10665 3UTR 100% 4.950 2.475 Y Gad2 n/a
14 TRCN0000093044 CCGTATTCATCGACACCTGAA pLKO.1 11642 3UTR 100% 4.050 2.025 Y H2afz n/a
15 TRCN0000093047 CGACACCTGAAATCTAGGACA pLKO.1 11652 3UTR 100% 2.640 1.320 Y H2afz n/a
16 TRCN0000054408 ACGCCTTTAATCCCAGCACTT pLKO.1 10606 3UTR 100% 4.050 2.025 Y Mtif2 n/a
Download CSV

shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_006508065.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

Download CSV

All ORF constructs matching this transcript

No results found.