Transcript: Mouse XM_006508512.3

PREDICTED: Mus musculus solute carrier family 22 (organic cation transporter), member 18 (Slc22a18), transcript variant X3, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Slc22a18 (18400)
Length:
1331
CDS:
91..1269

Additional Resources:

NCBI RefSeq record:
XM_006508512.3
NBCI Gene record:
Slc22a18 (18400)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_006508512.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000428182 TGTATTCCTGGTCAAGGTAAT pLKO_005 684 CDS 100% 10.800 15.120 N Slc22a18 n/a
2 TRCN0000428960 GATCCAGTGTGCTGGTCTTTG pLKO_005 920 CDS 100% 10.800 8.640 N Slc22a18 n/a
3 TRCN0000437076 GATGTCCAGTGTGCTCCATTT pLKO_005 966 CDS 100% 10.800 7.560 N Slc22a18 n/a
4 TRCN0000437222 GCTTGTCCTATTGGTCCTTTG pLKO_005 1209 CDS 100% 6.000 4.200 N Slc22a18 n/a
5 TRCN0000070129 CCTCTGCTTTGGCATTGGAAT pLKO.1 435 CDS 100% 4.950 3.465 N Slc22a18 n/a
6 TRCN0000070130 CCTTTGGCTACCTACAGACAA pLKO.1 143 CDS 100% 4.950 3.465 N Slc22a18 n/a
7 TRCN0000070132 CTCTGCATCTGTGCAACCATT pLKO.1 1098 CDS 100% 4.950 3.465 N Slc22a18 n/a
8 TRCN0000038703 TGGCTACCTCATGTCCTTCTT pLKO.1 822 CDS 100% 4.950 3.465 N SLC22A18 n/a
9 TRCN0000332983 TGGCTACCTCATGTCCTTCTT pLKO_005 822 CDS 100% 4.950 3.465 N SLC22A18 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_006508512.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.