Transcript: Mouse XM_006510776.3

PREDICTED: Mus musculus RAS p21 protein activator 2 (Rasa2), transcript variant X2, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Rasa2 (114713)
Length:
4834
CDS:
181..2553

Additional Resources:

NCBI RefSeq record:
XM_006510776.3
NBCI Gene record:
Rasa2 (114713)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_006510776.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000034349 GCGCGATTGTTTCTGCACTAT pLKO.1 183 CDS 100% 4.950 6.930 N Rasa2 n/a
2 TRCN0000301607 GCGCGATTGTTTCTGCACTAT pLKO_005 183 CDS 100% 4.950 6.930 N Rasa2 n/a
3 TRCN0000304370 TCCAGATGCCAACGCAATATT pLKO_005 1173 CDS 100% 15.000 10.500 N Rasa2 n/a
4 TRCN0000310898 TCGGTCAGAACTTTCCATTAA pLKO_005 2968 3UTR 100% 13.200 9.240 N Rasa2 n/a
5 TRCN0000034352 CCACAGAAAGAACCTGGTTAT pLKO.1 2368 CDS 100% 10.800 7.560 N Rasa2 n/a
6 TRCN0000034350 GCAGTCATAGTGGTAAAGAAA pLKO.1 392 CDS 100% 5.625 3.938 N Rasa2 n/a
7 TRCN0000301606 GCAGTCATAGTGGTAAAGAAA pLKO_005 392 CDS 100% 5.625 3.938 N Rasa2 n/a
8 TRCN0000034351 CCTGTGAAATAGATCCTGTTA pLKO.1 1310 CDS 100% 4.950 3.465 N Rasa2 n/a
9 TRCN0000301698 CCTGTGAAATAGATCCTGTTA pLKO_005 1310 CDS 100% 4.950 3.465 N Rasa2 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_006510776.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.