Transcript: Mouse XM_006511745.3

PREDICTED: Mus musculus centrosomal protein 63 (Cep63), transcript variant X13, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Cep63 (28135)
Length:
2494
CDS:
120..2222

Additional Resources:

NCBI RefSeq record:
XM_006511745.3
NBCI Gene record:
Cep63 (28135)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_006511745.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000256651 CAGACGGAAGACTGGATTATA pLKO_005 2236 3UTR 100% 15.000 21.000 N Cep63 n/a
2 TRCN0000256648 TCATGAAACAGATCGATATAA pLKO_005 202 CDS 100% 15.000 21.000 N Cep63 n/a
3 TRCN0000256652 CACCAGCGAGATATCACTATT pLKO_005 1383 CDS 100% 13.200 18.480 N Cep63 n/a
4 TRCN0000256650 GCACAGACATGACGGAATAAA pLKO_005 1799 CDS 100% 15.000 10.500 N Cep63 n/a
5 TRCN0000256649 GGCTGAACAGTCGGAGATAAT pLKO_005 650 CDS 100% 13.200 9.240 N Cep63 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_006511745.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_04195 pDONR223 100% 59.7% 60.6% None (many diffs) n/a
2 ccsbBroad304_04195 pLX_304 0% 59.7% 60.6% V5 (many diffs) n/a
3 TRCN0000466011 GTCTACCCGGTGCTCGGTATTGGT pLX_317 21.2% 59.7% 60.6% V5 (many diffs) n/a
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