Transcript: Mouse XM_006513643.3

PREDICTED: Mus musculus adenomatosis polyposis coli 2 (Apc2), transcript variant X1, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Apc2 (23805)
Length:
12822
CDS:
3637..10590

Additional Resources:

NCBI RefSeq record:
XM_006513643.3
NBCI Gene record:
Apc2 (23805)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_006513643.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000097240 CGTCGAATCAAAGATGAAGAT pLKO.1 10114 CDS 100% 4.950 3.960 N Apc2 n/a
2 TRCN0000097242 CCCACTGAGATAACCCAGAAA pLKO.1 8656 CDS 100% 4.950 3.465 N Apc2 n/a
3 TRCN0000097239 CCACTGAGATAACCCAGAAAT pLKO.1 8657 CDS 100% 13.200 7.920 N Apc2 n/a
4 TRCN0000097241 GCTGTCATTTGACGAAGAATA pLKO.1 5004 CDS 100% 13.200 7.920 N Apc2 n/a
5 TRCN0000097243 CCCAGCAGTGATGTCTATGTT pLKO.1 6135 CDS 100% 5.625 3.375 N Apc2 n/a
6 TRCN0000166364 CACACACACACACACACACAA pLKO.1 1822 5UTR 100% 4.950 2.475 Y KAAG1 n/a
Download CSV

shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_006513643.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

Download CSV

All ORF constructs matching this transcript

No results found.