Transcript: Mouse XM_006514485.3

PREDICTED: Mus musculus cordon-bleu WH2 repeat (Cobl), transcript variant X8, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Cobl (12808)
Length:
5372
CDS:
239..4006

Additional Resources:

NCBI RefSeq record:
XM_006514485.3
NBCI Gene record:
Cobl (12808)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_006514485.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000178003 GTGCATACTGTACTTCTGAAA pLKO.1 623 CDS 100% 4.950 6.930 N Cobl n/a
2 TRCN0000182856 CCAACTCACCATCCTTGCATT pLKO.1 1038 CDS 100% 4.950 3.960 N Cobl n/a
3 TRCN0000182082 CGAAACAGACACTCCACCTAT pLKO.1 2488 CDS 100% 4.950 3.960 N Cobl n/a
4 TRCN0000177543 CCAAGTATCATCACTTTAGAA pLKO.1 4040 3UTR 100% 5.625 3.938 N Cobl n/a
5 TRCN0000177705 CCACAGTTACATCACTTGTTT pLKO.1 2103 CDS 100% 5.625 3.938 N Cobl n/a
6 TRCN0000198686 CCCACAGTTACATCACTTGTT pLKO.1 2102 CDS 100% 4.950 3.465 N Cobl n/a
7 TRCN0000198735 CCCAGTTCGTTATCTACAGAT pLKO.1 3428 CDS 100% 4.950 3.465 N Cobl n/a
8 TRCN0000182558 GCAACCACTGAACAGTGTCAT pLKO.1 2894 CDS 100% 4.950 3.465 N Cobl n/a
9 TRCN0000181669 GCAGTCTCTTGTTCTGTGAAA pLKO.1 2738 CDS 100% 4.950 3.465 N Cobl n/a
10 TRCN0000182450 GCAATGATGGACCTACTGGTT pLKO.1 488 CDS 100% 2.640 1.848 N Cobl n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_006514485.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.