Transcript: Mouse XM_006515900.3

PREDICTED: Mus musculus gephyrin (Gphn), transcript variant X3, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Gphn (268566)
Length:
3989
CDS:
687..3164

Additional Resources:

NCBI RefSeq record:
XM_006515900.3
NBCI Gene record:
Gphn (268566)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_006515900.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000098587 GCATACAAGATAGTACCAGAT pLKO.1 849 CDS 100% 4.050 5.670 N Gphn n/a
2 TRCN0000313416 GAAGACCGCAGTGGGATAAAT pLKO_005 780 CDS 100% 15.000 12.000 N Gphn n/a
3 TRCN0000364532 GAAGACCGCAGTGGGATAAAT pLKO_005 780 CDS 100% 15.000 12.000 N GPHN n/a
4 TRCN0000119042 CCTTCTTAGTATGCTTCATAA pLKO.1 3569 3UTR 100% 13.200 10.560 N GPHN n/a
5 TRCN0000313417 CGCAGTGCCAATGGATTATTG pLKO_005 3063 CDS 100% 13.200 10.560 N Gphn n/a
6 TRCN0000364524 ATAGTTCCTCATCACATATAA pLKO_005 1411 CDS 100% 15.000 10.500 N GPHN n/a
7 TRCN0000369147 GTCAACATCTTGAACTATATT pLKO_005 3277 3UTR 100% 15.000 10.500 N GPHN n/a
8 TRCN0000313487 CCAGAATACCACCGGTGTATA pLKO_005 2964 CDS 100% 13.200 9.240 N Gphn n/a
9 TRCN0000098588 CCATCATCAAAGCCAGGTTAT pLKO.1 2917 CDS 100% 10.800 7.560 N Gphn n/a
10 TRCN0000313418 TGCTGATGGGATCGCTCAATG pLKO_005 1069 CDS 100% 10.800 7.560 N Gphn n/a
11 TRCN0000098585 CCCTTCTTAGTATGCTTCATA pLKO.1 3568 3UTR 100% 5.625 3.938 N Gphn n/a
12 TRCN0000312312 CCCTTCTTAGTATGCTTCATA pLKO_005 3568 3UTR 100% 5.625 3.938 N Gphn n/a
13 TRCN0000098589 GCAAGAAAGGATCTCAGGAAT pLKO.1 1165 CDS 100% 4.950 3.465 N Gphn n/a
14 TRCN0000098586 CCCAACAATCAACCTGGGAAT pLKO.1 2570 CDS 100% 4.050 2.835 N Gphn n/a
15 TRCN0000364523 CCCATCGGCCATGACATTAAA pLKO_005 2328 CDS 100% 15.000 21.000 N GPHN n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_006515900.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.