Transcript: Mouse XM_006516769.3

PREDICTED: Mus musculus phenylalanine-tRNA synthetase 2 (mitochondrial) (Fars2), transcript variant X1, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Fars2 (69955)
Length:
1705
CDS:
196..1551

Additional Resources:

NCBI RefSeq record:
XM_006516769.3
NBCI Gene record:
Fars2 (69955)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_006516769.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000262549 GAGTTATTTGCTGGCGTAAAG pLKO_005 805 CDS 100% 10.800 15.120 N Fars2 n/a
2 TRCN0000262551 GCGATCCAGGACACCTCTATT pLKO_005 504 CDS 100% 13.200 10.560 N Fars2 n/a
3 TRCN0000076316 GAACTTTGATAGCCTGCTAAT pLKO.1 567 CDS 100% 10.800 8.640 N Fars2 n/a
4 TRCN0000222654 CCGTGTTCAATGACATTTCAT pLKO.1 1280 CDS 100% 5.625 4.500 N Fars2 n/a
5 TRCN0000328413 CACCCTCTGTGGCTGATTAAG pLKO_005 445 CDS 100% 13.200 9.240 N Fars2 n/a
6 TRCN0000262550 TTGCTGCATGCGGGACTTAAT pLKO_005 682 CDS 100% 13.200 9.240 N Fars2 n/a
7 TRCN0000076317 GCTTGTGGAGTTCGACCTTAA pLKO.1 906 CDS 100% 10.800 7.560 N Fars2 n/a
8 TRCN0000282322 TTGTGGTAGGTGACGTGTATC pLKO_005 710 CDS 100% 10.800 7.560 N Fars2 n/a
9 TRCN0000222656 CCAGATTGATTGCCAGCACTA pLKO.1 738 CDS 100% 4.050 2.835 N Fars2 n/a
10 TRCN0000222655 GCAGTGGCAGTCCACAGGCCA pLKO.1 1553 3UTR 100% 0.000 0.000 N Fars2 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_006516769.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.