Transcript: Mouse XM_006517523.3

PREDICTED: Mus musculus adaptor-related protein complex 3, beta 1 subunit (Ap3b1), transcript variant X1, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Ap3b1 (11774)
Length:
4342
CDS:
525..3881

Additional Resources:

NCBI RefSeq record:
XM_006517523.3
NBCI Gene record:
Ap3b1 (11774)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_006517523.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000380965 TAAATCACTGGTGCGCTTATT pLKO_005 1535 CDS 100% 13.200 18.480 N Ap3b1 n/a
2 TRCN0000380402 TACGTTTACCTTGTCCGATAT pLKO_005 819 CDS 100% 10.800 15.120 N Ap3b1 n/a
3 TRCN0000100441 CGGTTCGCAATGTAGAAGTAA pLKO.1 2467 CDS 100% 5.625 7.875 N Ap3b1 n/a
4 TRCN0000100442 CCGGATAGAATCGATCTGATT pLKO.1 1170 CDS 100% 4.950 6.930 N Ap3b1 n/a
5 TRCN0000100443 CCCGGATAGAATCGATCTGAT pLKO.1 1169 CDS 100% 4.950 3.960 N Ap3b1 n/a
6 TRCN0000311174 TGGCTGTCGCTCAGCTATATT pLKO_005 1477 CDS 100% 15.000 10.500 N Ap3b1 n/a
7 TRCN0000311172 TGTCATGATGCTGGCTATTAA pLKO_005 971 CDS 100% 15.000 10.500 N Ap3b1 n/a
8 TRCN0000380055 ACAGATCACCCTGACTAATAC pLKO_005 3263 CDS 100% 13.200 9.240 N Ap3b1 n/a
9 TRCN0000304937 CAAGCATCCTTTGGCTAATTG pLKO_005 2017 CDS 100% 13.200 9.240 N Ap3b1 n/a
10 TRCN0000100444 GCTGTCCAACAGGGATGAAAT pLKO.1 1874 CDS 100% 13.200 9.240 N Ap3b1 n/a
11 TRCN0000375365 AGATCCACTGATCCAACTATG pLKO_005 1659 CDS 100% 10.800 7.560 N Ap3b1 n/a
12 TRCN0000100440 GCTTGGCAATCGTCCTTCTTA pLKO.1 4201 3UTR 100% 5.625 3.938 N Ap3b1 n/a
13 TRCN0000302757 GCTTGGCAATCGTCCTTCTTA pLKO_005 4201 3UTR 100% 5.625 3.938 N Ap3b1 n/a
14 TRCN0000065058 CCTCTCAGCTTGGTATGTGAA pLKO.1 4262 3UTR 100% 4.950 3.465 N AP3B1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_006517523.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.