Transcript: Mouse XM_006518787.3

PREDICTED: Mus musculus solute carrier family 39 (zinc transporter), member 14 (Slc39a14), transcript variant X2, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Slc39a14 (213053)
Length:
4857
CDS:
60..1658

Additional Resources:

NCBI RefSeq record:
XM_006518787.3
NBCI Gene record:
Slc39a14 (213053)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_006518787.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000344146 GGAACCTCTCCACGTGCTTTA pLKO_005 466 CDS 100% 10.800 7.560 N SLC39A14 n/a
2 TRCN0000038450 GCTGGAGGAATGTTCTTGTAT pLKO.1 1473 CDS 100% 5.625 3.938 N SLC39A14 n/a
3 TRCN0000110855 CCTCCCTTTCTCTTGGAAGAA pLKO.1 1960 3UTR 100% 4.950 3.465 N Slc39a14 n/a
4 TRCN0000325400 CCTCCCTTTCTCTTGGAAGAA pLKO_005 1960 3UTR 100% 4.950 3.465 N Slc39a14 n/a
5 TRCN0000110856 GCAGGCTCTCTTCTTCAACTT pLKO.1 1367 CDS 100% 4.950 3.465 N Slc39a14 n/a
6 TRCN0000325460 GCAGGCTCTCTTCTTCAACTT pLKO_005 1367 CDS 100% 4.950 3.465 N Slc39a14 n/a
7 TRCN0000110858 TCCAGAATCTTGGCCTCCTAA pLKO.1 1579 CDS 100% 4.950 3.465 N Slc39a14 n/a
8 TRCN0000353975 TCCAGAATCTTGGCCTCCTAA pLKO_005 1579 CDS 100% 4.950 3.465 N Slc39a14 n/a
9 TRCN0000110857 GAAGATCTCATGGACCGCTAT pLKO.1 342 CDS 100% 4.050 2.835 N Slc39a14 n/a
10 TRCN0000353977 GAAGATCTCATGGACCGCTAT pLKO_005 342 CDS 100% 4.050 2.835 N Slc39a14 n/a
11 TRCN0000166364 CACACACACACACACACACAA pLKO.1 3298 3UTR 100% 4.950 2.475 Y KAAG1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_006518787.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.