Transcript: Mouse XM_006519268.3

PREDICTED: Mus musculus K(lysine) acetyltransferase 6B (Kat6b), transcript variant X5, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Kat6b (54169)
Length:
7348
CDS:
882..6500

Additional Resources:

NCBI RefSeq record:
XM_006519268.3
NBCI Gene record:
Kat6b (54169)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_006519268.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000222166 GCACGGACTTTAACGATGCAA pLKO.1 6144 CDS 100% 3.000 4.200 N KAT6B n/a
2 TRCN0000039343 CCACAGTCAGTTTCCATTAAA pLKO.1 3639 CDS 100% 15.000 10.500 N Kat6b n/a
3 TRCN0000287544 CCACAGTCAGTTTCCATTAAA pLKO_005 3639 CDS 100% 15.000 10.500 N Kat6b n/a
4 TRCN0000039341 CCCACAGGAATATGCAAGATT pLKO.1 2549 CDS 100% 5.625 3.938 N Kat6b n/a
5 TRCN0000287461 CCCACAGGAATATGCAAGATT pLKO_005 2549 CDS 100% 5.625 3.938 N Kat6b n/a
6 TRCN0000039340 CCTGTGATAGAGGATTCCATA pLKO.1 1753 CDS 100% 4.950 3.465 N Kat6b n/a
7 TRCN0000222167 CCACCTACATTTCTGCCTCTA pLKO.1 2134 CDS 100% 4.050 2.835 N KAT6B n/a
8 TRCN0000039339 CCGTGTAATGATCTACGCAAT pLKO.1 1176 CDS 100% 4.050 2.835 N Kat6b n/a
9 TRCN0000039342 CCATTAAGTAACACAGGGCTT pLKO.1 5832 CDS 100% 2.160 1.512 N Kat6b n/a
10 TRCN0000287463 CCATTAAGTAACACAGGGCTT pLKO_005 5832 CDS 100% 2.160 1.512 N Kat6b n/a
11 TRCN0000294917 GTCGTGCCTGCTTCCATTAAA pLKO_005 6789 3UTR 100% 15.000 9.000 N Kat6b n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_006519268.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.