Transcript: Mouse XM_006520578.3

PREDICTED: Mus musculus solute carrier family 11 (proton-coupled divalent metal ion transporters), member 2 (Slc11a2), transcript variant X3, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Slc11a2 (18174)
Length:
3316
CDS:
424..2130

Additional Resources:

NCBI RefSeq record:
XM_006520578.3
NBCI Gene record:
Slc11a2 (18174)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_006520578.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000306611 ACAGGTGAATCGGGCCAATAA pLKO_005 1260 CDS 100% 13.200 18.480 N Slc11a2 n/a
2 TRCN0000306676 TCTTTGTCGTGTCCGTCTTTG pLKO_005 1358 CDS 100% 10.800 15.120 N Slc11a2 n/a
3 TRCN0000079533 CGTGCCAGTTTGGGTAAGATT pLKO.1 2403 3UTR 100% 5.625 7.875 N Slc11a2 n/a
4 TRCN0000079534 CGTTTGGATATGAGTACATTA pLKO.1 1085 CDS 100% 13.200 9.240 N Slc11a2 n/a
5 TRCN0000306610 GGGTTTAAAGTGTATCGATAT pLKO_005 2363 3UTR 100% 10.800 7.560 N Slc11a2 n/a
6 TRCN0000311593 TAGGGCATGTGGCACTCTATG pLKO_005 1928 CDS 100% 10.800 7.560 N Slc11a2 n/a
7 TRCN0000079536 CACGTTTGGATATGAGTACAT pLKO.1 1083 CDS 100% 4.950 3.465 N Slc11a2 n/a
8 TRCN0000332748 CACGTTTGGATATGAGTACAT pLKO_005 1083 CDS 100% 4.950 3.465 N Slc11a2 n/a
9 TRCN0000079535 GCCTGAACTCTATCTTCTGAA pLKO.1 2076 CDS 100% 4.950 3.465 N Slc11a2 n/a
10 TRCN0000079537 CTTTCTTATGAGCATTGCCTA pLKO.1 654 CDS 100% 2.640 1.848 N Slc11a2 n/a
11 TRCN0000043251 GCTTTCGTAAACTCTGGGCTT pLKO.1 620 CDS 100% 2.160 1.512 N SLC11A2 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_006520578.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.