Transcript: Mouse XM_006520706.1

PREDICTED: Mus musculus family with sequence similarity 91, member A1 (Fam91a1), transcript variant X3, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Fam91a1 (210998)
Length:
5718
CDS:
619..2907

Additional Resources:

NCBI RefSeq record:
XM_006520706.1
NBCI Gene record:
Fam91a1 (210998)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_006520706.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000198095 CATCGCTAGTCTCCATTTGTA pLKO.1 2886 CDS 100% 5.625 4.500 N Fam91a1 n/a
2 TRCN0000279146 CATCGCTAGTCTCCATTTGTA pLKO_005 2886 CDS 100% 5.625 4.500 N Fam91a1 n/a
3 TRCN0000197490 CGATGCTGAATGATGCTTTAA pLKO.1 2159 CDS 100% 13.200 9.240 N Fam91a1 n/a
4 TRCN0000279209 CGATGCTGAATGATGCTTTAA pLKO_005 2159 CDS 100% 13.200 9.240 N Fam91a1 n/a
5 TRCN0000160575 CCGAATTAAACCGGAAAGTTT pLKO.1 2594 CDS 100% 5.625 3.938 N FAM91A1 n/a
6 TRCN0000197787 GAGTCGTTTGAAATGGTCATT pLKO.1 2470 CDS 100% 4.950 3.465 N Fam91a1 n/a
7 TRCN0000279207 GAGTCGTTTGAAATGGTCATT pLKO_005 2470 CDS 100% 4.950 3.465 N Fam91a1 n/a
8 TRCN0000177413 GCTCTTAATCTCATTTGCTTT pLKO.1 4481 3UTR 100% 4.950 3.465 N Fam91a1 n/a
9 TRCN0000279144 GCTCTTAATCTCATTTGCTTT pLKO_005 4481 3UTR 100% 4.950 3.465 N Fam91a1 n/a
10 TRCN0000160963 GCTTGCAAATGTCCTTGAGAT pLKO.1 1203 CDS 100% 4.950 3.465 N FAM91A1 n/a
11 TRCN0000178199 CGTGTGTTTGTGCTTTGCTTT pLKO.1 4843 3UTR 100% 4.950 2.970 N Fam91a1 n/a
12 TRCN0000279145 CGTGTGTTTGTGCTTTGCTTT pLKO_005 4843 3UTR 100% 4.950 2.970 N Fam91a1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_006520706.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.