Transcript: Mouse XM_006521245.1

PREDICTED: Mus musculus LIM domain and actin binding 1 (Lima1), transcript variant X1, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Lima1 (65970)
Length:
3309
CDS:
82..1482

Additional Resources:

NCBI RefSeq record:
XM_006521245.1
NBCI Gene record:
Lima1 (65970)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_006521245.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000112920 CCCATCATCAACAATAAGAAA pLKO.1 2332 3UTR 100% 5.625 7.875 N Lima1 n/a
2 TRCN0000420023 ATTCATGTGGGAGCAACTTTG pLKO_005 1577 3UTR 100% 10.800 7.560 N Lima1 n/a
3 TRCN0000445847 GAAGGGCTAAGTAGGGATTTC pLKO_005 1867 3UTR 100% 10.800 7.560 N Lima1 n/a
4 TRCN0000416294 TAAAGAGAAACCGGTACTATG pLKO_005 1439 CDS 100% 10.800 7.560 N Lima1 n/a
5 TRCN0000435305 GCAACTATGACGAGGGCTTTG pLKO_005 563 CDS 100% 6.000 4.200 N Lima1 n/a
6 TRCN0000112922 CGACGATGGAAAGGAAACAAA pLKO.1 1103 CDS 100% 5.625 3.938 N Lima1 n/a
7 TRCN0000112921 GCCTCACTTCAATCAACTCTT pLKO.1 531 CDS 100% 4.950 3.465 N Lima1 n/a
8 TRCN0000444400 TATCAAGTGGTGCGCAGAAAC pLKO_005 1534 3UTR 100% 10.800 6.480 N Lima1 n/a
9 TRCN0000112923 CCGGAAAGTTCTCCTTCCAAA pLKO.1 325 CDS 100% 4.950 2.970 N Lima1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_006521245.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.