Transcript: Mouse XM_006521487.3

PREDICTED: Mus musculus keratin 80 (Krt80), transcript variant X1, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Krt80 (74127)
Length:
3069
CDS:
756..1469

Additional Resources:

NCBI RefSeq record:
XM_006521487.3
NBCI Gene record:
Krt80 (74127)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_006521487.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000091687 GCGCGAGTATCAGGATCTCAT pLKO.1 1199 CDS 100% 4.950 6.930 N Krt80 n/a
2 TRCN0000312166 GCGCGAGTATCAGGATCTCAT pLKO_005 1199 CDS 100% 4.950 6.930 N Krt80 n/a
3 TRCN0000091685 GAGCTTCGTAAAGTGAGCCAA pLKO.1 534 5UTR 100% 2.640 2.112 N Krt80 n/a
4 TRCN0000313207 CTTCCACTGCAGCCGACTTAA pLKO_005 1500 3UTR 100% 13.200 9.240 N Krt80 n/a
5 TRCN0000313205 TCGACCTCAGCCACCATTATG pLKO_005 487 5UTR 100% 13.200 9.240 N Krt80 n/a
6 TRCN0000116582 CCCTTCCTGTTTCTGCATGAT pLKO.1 2941 3UTR 100% 4.950 3.465 N KRT80 n/a
7 TRCN0000091686 CCTGGAGTTTACCTTTGTCCA pLKO.1 650 5UTR 100% 2.640 1.848 N Krt80 n/a
8 TRCN0000312165 CCTGGAGTTTACCTTTGTCCA pLKO_005 650 5UTR 100% 2.640 1.848 N Krt80 n/a
9 TRCN0000091684 GAGAAATATCTCTCCCAGGAA pLKO.1 1431 CDS 100% 2.640 1.848 N Krt80 n/a
10 TRCN0000091683 CCTGGGAAGATCTGGAAGTTT pLKO.1 2416 3UTR 100% 5.625 3.375 N Krt80 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_006521487.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.