Transcript: Mouse XM_006522666.2

PREDICTED: Mus musculus sorting nexin 29 (Snx29), transcript variant X1, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Snx29 (74478)
Length:
3160
CDS:
96..2555

Additional Resources:

NCBI RefSeq record:
XM_006522666.2
NBCI Gene record:
Snx29 (74478)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_006522666.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000436434 GTCTGAACTCCATACTCTTTG pLKO_005 595 CDS 100% 10.800 15.120 N SNX29 n/a
2 TRCN0000238699 ACCGATCCTCCGTCAACATCA pLKO_005 985 CDS 100% 4.950 6.930 N Snx29 n/a
3 TRCN0000238697 AGGCACCTTTGGGCCAAATTC pLKO_005 1019 CDS 100% 13.200 9.240 N Snx29 n/a
4 TRCN0000238700 CAGCTCATGGAAGATTGATTC pLKO_005 1058 CDS 100% 10.800 7.560 N Snx29 n/a
5 TRCN0000105966 CATGTGTATCAGGTCTACATT pLKO.1 2133 CDS 100% 5.625 3.938 N Snx29 n/a
6 TRCN0000105967 CTGGAGATTTGAGCCAAACAT pLKO.1 2011 CDS 100% 5.625 3.938 N Snx29 n/a
7 TRCN0000105969 CCATGTGTATCAGGTCTACAT pLKO.1 2132 CDS 100% 4.950 3.465 N Snx29 n/a
8 TRCN0000105968 CCTGGAGATTTGAGCCAAACA pLKO.1 2010 CDS 100% 4.950 3.465 N Snx29 n/a
9 TRCN0000020938 GATCCGCTTTGGAGGGAGAAA pLKO.1 170 CDS 100% 4.950 3.465 N SNX29 n/a
10 TRCN0000238696 AGAACGAGGAGGATGCGTACA pLKO_005 1147 CDS 100% 4.050 2.835 N Snx29 n/a
11 TRCN0000105965 GCCATGATGAACAGAAAGGAT pLKO.1 1530 CDS 100% 3.000 2.100 N Snx29 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_006522666.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.