Transcript: Mouse XM_006522936.2

PREDICTED: Mus musculus intersectin 1 (SH3 domain protein 1A) (Itsn1), transcript variant X6, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Itsn1 (16443)
Length:
14013
CDS:
428..5431

Additional Resources:

NCBI RefSeq record:
XM_006522936.2
NBCI Gene record:
Itsn1 (16443)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_006522936.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000328008 TAGACTACTTGGCCTATAATA pLKO_005 5814 3UTR 100% 15.000 21.000 N Itsn1 n/a
2 TRCN0000379472 AGCAGACACCAACGTACTTAA pLKO_005 5923 3UTR 100% 13.200 18.480 N Itsn1 n/a
3 TRCN0000380604 ACAATCCAGGACACGCTAAAC pLKO_005 5165 CDS 100% 10.800 15.120 N Itsn1 n/a
4 TRCN0000380399 TAGGAGTCGTTCTCGACAATC pLKO_005 5547 3UTR 100% 10.800 15.120 N Itsn1 n/a
5 TRCN0000111567 GCATTTGGTATAGGAGGGATT pLKO.1 839 CDS 100% 4.050 5.670 N Itsn1 n/a
6 TRCN0000026173 GCGGGATTTATTACTGGTGAT pLKO.1 605 CDS 100% 4.050 5.670 N Itsn1 n/a
7 TRCN0000111566 CGGACATGAATAACGATGGAA pLKO.1 693 CDS 100% 3.000 4.200 N Itsn1 n/a
8 TRCN0000328078 ATCCTAGCTATGCACCTAATT pLKO_005 1337 CDS 100% 13.200 9.240 N Itsn1 n/a
9 TRCN0000111569 CCAAATCTAACCTTCAGTATA pLKO.1 4785 CDS 100% 13.200 9.240 N Itsn1 n/a
10 TRCN0000328006 GATACTCAGTGACCAGTTAAA pLKO_005 2134 CDS 100% 13.200 9.240 N Itsn1 n/a
11 TRCN0000026190 GCTGAAATACAGGCAGTTATT pLKO.1 1165 CDS 100% 13.200 9.240 N Itsn1 n/a
12 TRCN0000328009 TGAAGCCGATAGCGGGATTTA pLKO_005 594 CDS 100% 13.200 9.240 N Itsn1 n/a
13 TRCN0000111565 CCAGGCAAGAACTATTCTCAT pLKO.1 1228 CDS 100% 4.950 3.465 N Itsn1 n/a
14 TRCN0000026196 CCCAAATCTAACCTTCAGTAT pLKO.1 4784 CDS 100% 4.950 3.465 N Itsn1 n/a
15 TRCN0000111568 GAGAGCTAAGAATTGCTGAAA pLKO.1 2046 CDS 100% 4.950 3.465 N Itsn1 n/a
16 TRCN0000026180 CCAGCTTTATACTGAAGCCTA pLKO.1 4380 CDS 100% 2.640 1.848 N Itsn1 n/a
17 TRCN0000002010 GCAGTTGTTTGATGAGCCGTA pLKO.1 5410 CDS 100% 2.160 1.512 N ITSN1 n/a
18 TRCN0000379570 CAAGATACCCGCTGATCATTA pLKO_005 4413 CDS 100% 13.200 7.920 N Itsn1 n/a
19 TRCN0000026163 GCCTGGAGTTAGAGAAGCAAA pLKO.1 2412 CDS 100% 4.950 2.970 N Itsn1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_006522936.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.