Transcript: Mouse XM_006523065.2

PREDICTED: Mus musculus transmembrane protease, serine 2 (Tmprss2), transcript variant X2, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Tmprss2 (50528)
Length:
3007
CDS:
77..1549

Additional Resources:

NCBI RefSeq record:
XM_006523065.2
NBCI Gene record:
Tmprss2 (50528)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_006523065.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000305036 ACGGGAACGTGACGGTATTTA pLKO_005 1491 CDS 100% 15.000 21.000 N Tmprss2 n/a
2 TRCN0000032151 CCCATCCAAATTACGACTCTA pLKO.1 1068 CDS 100% 4.950 6.930 N Tmprss2 n/a
3 TRCN0000303024 CCCATCCAAATTACGACTCTA pLKO_005 1068 CDS 100% 4.950 6.930 N Tmprss2 n/a
4 TRCN0000374513 GGCAACGTTGACCTCTATAAA pLKO_005 722 CDS 100% 15.000 10.500 N Tmprss2 n/a
5 TRCN0000032152 GCCGCTGGTTACTTTGAAGAA pLKO.1 1399 CDS 100% 4.950 3.465 N Tmprss2 n/a
6 TRCN0000303097 GCCGCTGGTTACTTTGAAGAA pLKO_005 1399 CDS 100% 4.950 3.465 N Tmprss2 n/a
7 TRCN0000032149 CCCTGGGTTTATACCAGGAAA pLKO.1 2607 3UTR 100% 0.495 0.347 N Tmprss2 n/a
8 TRCN0000032153 GCAAGCCTCAACATCTGTCAT pLKO.1 250 CDS 100% 4.950 2.970 N Tmprss2 n/a
9 TRCN0000303026 GCAAGCCTCAACATCTGTCAT pLKO_005 250 CDS 100% 4.950 2.970 N Tmprss2 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_006523065.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.