Transcript: Mouse XM_006524804.2

PREDICTED: Mus musculus predicted gene 8909 (Gm8909), transcript variant X4, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Gm8909 (667977)
Length:
1364
CDS:
86..1207

Additional Resources:

NCBI RefSeq record:
XM_006524804.2
NBCI Gene record:
Gm8909 (667977)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_006524804.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000271913 TCACACATTTCAGAGGATGTA pLKO_005 436 CDS 100% 4.950 3.465 N Gm8909 n/a
2 TRCN0000271916 AGGGACTCCAACATGGTAATC pLKO_005 998 CDS 100% 10.800 6.480 N Gm8909 n/a
3 TRCN0000271953 AGGTACATGTGACCCATCATC pLKO_005 717 CDS 100% 4.950 2.970 N Gm8909 n/a
4 TRCN0000374452 CCACACTCGATGCGGTATTTC pLKO_005 164 CDS 100% 13.200 6.600 Y H2-D1 n/a
5 TRCN0000271917 CCCACACTCGATGCGGTATTT pLKO_005 163 CDS 100% 13.200 6.600 Y Gm8909 n/a
6 TRCN0000066903 GAGCAGAATTACACATGCCAT pLKO.1 920 CDS 100% 2.640 1.320 Y H2-Q6 n/a
7 TRCN0000192133 GAGCAGAATTACACATGCCAT pLKO.1 920 CDS 100% 2.640 1.320 Y H2-D1 n/a
8 TRCN0000066907 GAATTACACATGCCATGTGAA pLKO.1 925 CDS 100% 4.950 2.475 Y H2-Q6 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_006524804.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.