Transcript: Mouse XM_006526378.2

PREDICTED: Mus musculus neural precursor cell expressed, developmentally down-regulated gene 4-like (Nedd4l), transcript variant X9, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Nedd4l (83814)
Length:
7989
CDS:
491..3058

Additional Resources:

NCBI RefSeq record:
XM_006526378.2
NBCI Gene record:
Nedd4l (83814)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_006526378.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000379567 AGCTCGCCAACAGTAACTTTA pLKO_005 1472 CDS 100% 13.200 18.480 N Nedd4l n/a
2 TRCN0000086871 GCTCGCCAACAGTAACTTTAT pLKO.1 1473 CDS 100% 13.200 18.480 N Nedd4l n/a
3 TRCN0000380224 TGCCTTCTTGGAGGGATTTAC pLKO_005 2605 CDS 100% 13.200 18.480 N Nedd4l n/a
4 TRCN0000376386 GACAATTTAGGCCGAACTTAC pLKO_005 737 CDS 100% 10.800 15.120 N Nedd4l n/a
5 TRCN0000086869 CGGAGGCACATTAGTGAAGAT pLKO.1 881 CDS 100% 4.950 3.960 N Nedd4l n/a
6 TRCN0000086868 GCAGGCAAAGCCCTTAATAAA pLKO.1 3322 3UTR 100% 15.000 10.500 N Nedd4l n/a
7 TRCN0000379683 GCAGGCAAAGCCCTTAATAAA pLKO_005 3322 3UTR 100% 15.000 10.500 N NEDD4L n/a
8 TRCN0000086870 CCAGAGAGTTTAAGCAGAAAT pLKO.1 1911 CDS 100% 13.200 9.240 N Nedd4l n/a
9 TRCN0000086872 CGCATCCGGTTACTACAGTTT pLKO.1 2813 CDS 100% 4.950 3.465 N Nedd4l n/a
10 TRCN0000166364 CACACACACACACACACACAA pLKO.1 7637 3UTR 100% 4.950 2.475 Y KAAG1 n/a
Download CSV

shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_006526378.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

Download CSV

All ORF constructs matching this transcript

No results found.