Transcript: Mouse XM_006526459.2

PREDICTED: Mus musculus sal-like 3 (Drosophila) (Sall3), transcript variant X1, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Sall3 (20689)
Length:
6862
CDS:
416..4378

Additional Resources:

NCBI RefSeq record:
XM_006526459.2
NBCI Gene record:
Sall3 (20689)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_006526459.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000234100 GTTCGGGAGACCCGATATATT pLKO_005 6723 3UTR 100% 15.000 21.000 N Sall3 n/a
2 TRCN0000097901 CGCGAGGTTCATTGAGGATAA pLKO.1 4336 CDS 100% 10.800 15.120 N Sall3 n/a
3 TRCN0000218162 CAATTAGCAGGATACACTTAA pLKO_005 4372 CDS 100% 13.200 10.560 N Sall3 n/a
4 TRCN0000234098 GGTGGGCCTTCGCTTACTAAA pLKO_005 2201 CDS 100% 13.200 10.560 N Sall3 n/a
5 TRCN0000097900 CCCAACCTTAAATGAAGATTT pLKO.1 4927 3UTR 100% 13.200 9.240 N Sall3 n/a
6 TRCN0000234099 GCTAGTGGAGAACATCGATAA pLKO_005 2452 CDS 100% 10.800 7.560 N Sall3 n/a
7 TRCN0000234097 TCCCAGAATACCTCGACAATG pLKO_005 1887 CDS 100% 10.800 7.560 N Sall3 n/a
8 TRCN0000097903 CCATGGATGTGGAGGTATCTA pLKO.1 810 CDS 100% 5.625 3.938 N Sall3 n/a
9 TRCN0000097902 GACCAATTCAAGGCCCAGTTT pLKO.1 2375 CDS 100% 4.950 3.465 N Sall3 n/a
10 TRCN0000097904 GCTGCAACAGCATATCCGTAT pLKO.1 2713 CDS 100% 4.050 2.835 N Sall3 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_006526459.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.